PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G106900.1
Common NameB456_008G106900, LOC105763732
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 472aa    MW: 51510.8 Da    PI: 6.3211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G106900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13283353555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC......................TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkas...................kapskK.lsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++s                     + +   +Ka++L +++eY+k+Lq
  Gorai.008G106900.1 283 HNQSERKRRDKINQRMKTLQKLVPNSSkgnnltegyvdrcgdnhllPHKYPFmTDKASMLDEVIEYLKQLQ 353
                         9************************888****************985555557*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-16276369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-14276366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.32278352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-14283357No hitNo description
PfamPF000102.3E-11283353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-13284358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSQCVPSWEL DDNNPLTTRH HSFRFNSNST APDVPMLDYE VAELTWENGQ LAMHSLGPPR  60
VVAKQLNATT WDKPRASGGG GGTLESIVNQ ATCFPYGSKD SVGAGGDELV WLDHHRVSAA  120
ASSSSATMAM DALVPCSEDK TTTAHVLESM PGLGGGGTCM MGCSTRVGSC SGTVNTQDDV  180
TRKREKAVGV QVAPPEWEQS ASASATFGRD SHRNVTVDTY DKDFGVGFTS ISHGSIENTK  240
TATDNDHDSA SHSKPQEETG EEDKKETMKS SISTKRSRAA AIHNQSERKR RDKINQRMKT  300
LQKLVPNSSK GNNLTEGYVD RCGDNHLLPH KYPFMTDKAS MLDEVIEYLK QLQAQVQMMN  360
RMNLPSMMLQ QQLQMSMMAP MGMGMSVMDM NFMGRPNIIG ISPVLSNPFM TMNTPWDGSN  420
NNDRLQQAAS MTDPLSTFLA CQSQPMTMDA YSRMAAMYQQ MQQPPASSSK S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291ERKRRD
2287292RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.350.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487758560.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437517.10.0PREDICTED: transcription factor UNE10-like isoform X1
SwissprotQ8GZ381e-107UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D2PSK90.0A0A0D2PSK9_G
STRINGPOPTR_0002s14430.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-95bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]